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A Virus that Reorganizes the Human Genome

Cosma, Maria Pia (CRG)

Life & Medical Sciences

Viruses rely entirely on the cells they infect to survive and multiply. In this study, we discovered that Herpes simplex virus type 1 (HSV-1) does not only use the cell’s machinery, but also physically reorganizes the human genome inside the nucleus.Using advanced super-resolution microscopy, which allows us to see details far smaller than conventional microscopes, we observed how HSV-1 infection rapidly changes the structure of human DNA. As the virus replicates, it creates dedicated regions inside the nucleus where viral genes are actively expressed. At the same time, the human DNA becomes highly compacted and is displaced toward the edges of the nucleus.We found that this reorganization is driven by the virus hijacking the transcription machinery — the molecular system normally responsible for reading genes. By redirecting these essential proteins to its own genome, the virus shuts down most human gene activity and forces the cell to prioritize viral production.Remarkably, despite this dramatic reshaping, the overall organization of the genome remains surprisingly resilient. Understanding how viruses physically manipulate genome structure provides new insights into fundamental genome biology and may help identify new strategies to block viral infections .

Artistic representation inspired by super-resolution microscopy showing how herpesvirus infection reshapes the cell nucleus. Blue represents human DNA, which becomes compacted at the nuclear periphery during infection. Red indicates viral DNA, while green represents the transcription machinery hijacked by the virus


REFERENCIA

González-Almela E, Castells-Garcia A, Le Dily F, Merino MF, Carnevali D, Cusco P, Di Croce L & Cosma MP 2025, 'Herpes simplex virus type 1 reshapes host chromatin architecture via transcription machinery hijacking', Nature communications, 16 - 1 - 5313.